- added reference to C++ interface
- improved performance for very large sparse matrices
- added feasibility check
bugfix (concerned benefit matrices where for some of the rows exactly one assignment is allowed, thanks to Gary Guangning Tan for pointing out this problem)
bugfix related to the epsilon heuristic (2)
bugfix related to the epsilon heuristic
updated description
- mex implementation, which leads to a significant performance improvement
- support for sparse matrices
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When trying to solve for assignments given a cost matrix, what is the difference between
using Scipy's linear_sum_assignment function (which I think uses the Hungarian method)
describing the LP problem using a objective function with many boolean variables, add in the appropriate constraints and send it to a solver, such as through scipy.optimize.linprog ?
Is the later method slower than Hungarian method's O(N^3) but allows for more constraints to be added?
The main differences probably are that there is a somewhat large overhead you have to pay when solving the AP as a linear program: You have to build an LP model and ship it to a solver. In addition, an LP solver is a generalist. It solves all LP problems and focus in development is to be fast on average on all LPs and also to be fast-ish in the pathological cases.
When using the Hungarian method, you do not build a model, you just pass the cost matrix to a tailored algorithm. You will then use an algorithm developed for that specific problem to solve it. Hence, it will most likely solve it faster since it is a specialist.
So if you want to solve an AP you should probably use the tailored algorithm. If you plan on extending your model to handle other more general constraints as well, you might need the LP after all.
Edit: From a simple test in Python, my assumption is confirmed in this specific setup (which is to the advantage of the Hungarian method, I believe). The set up is as follows:
For each size, I have generated and solved ten instances, and I report the average time only.
And then there is of course the "but". I am not a ninja in Python and I have used pyomo for modelling the LPs. I believe that pyomo is known to be slow-ish whenbuilding models, hence I have only timed the solver.solve(model) part of the code - not building the model. There is however possibly a hugh overhead cost coming from pyomo translating the model to "gurobian" (I use gurobi as solver).
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Algorithm for approximately solving quadratic assignment problems.
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Fast approximate quadratic assignment problem solver.
This is a Python implementation of an algorithm for approximately solving quadratic assignment problems described in
Joshua T. Vogelstein and John M. Conroy and Vince Lyzinski and Louis J. Podrazik and Steven G. Kratzer and Eric T. Harley and Donniell E. Fishkind and R. Jacob Vogelstein and Carey E. Priebe (2012) Fast Approximate Quadratic Programming for Large (Brain) Graph Matching. arXiv:1112.5507 .
min 𝑃∈𝒫 <𝐹, 𝑃𝐷𝑃 𝖳 >
where 𝐷, 𝐹 ∈ ℝ 𝑛×𝑛 , 𝒫 is the set of 𝑛×𝑛 permutation matrices and <., .> denotes the Frobenius inner product.
The implementation employs the Frank–Wolfe algorithm .
GPU support is enabled through Torch. It is an optional dependency. In order to use the GPU you must pass Torch tensors that are on the CUDA device. If you pass CPU tensors the GPU will not be used.
Note that linear sum assignment, which is a part of the algorithm, is done on the CPU though SciPy. On a system with GPU GeForce RTX 2080 SUPER and CPU AMD Ryzen Threadripper 2920X (single thread at 3.5 - 4.3 GHz) for a float32, 128 sized problem linear sum assignment takes ~60% of the execution time. It may be possible to move that part on the GPU as well, but currently there are no good off-the-shelf GPU implementations for that. It is also unclear if there will be any significant speedup.
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I'm working on a script that takes the elements from companies and pairs them up with the elements of people . The goal is to optimize the pairings such that the sum of all pair values is maximized (the value of each individual pairing is precomputed and stored in the dictionary ctrPairs ).
They're all paired in a 1:1, each company has only one person and each person belongs to only one company, and the number of companies is equal to the number of people. I used a top-down approach with a memoization table ( memDict ) to avoid recomputing areas that have already been solved.
I believe that I could vastly improve the speed of what's going on here but I'm not really sure how. Areas I'm worried about are marked with #slow? , any advice would be appreciated (the script works for inputs of lists n<15 but it gets incredibly slow for n > ~15)
To all those who wonder about the use of learning theory, this question is a good illustration. The right question is not about a "fast way to bounce between lists and tuples in python" — the reason for the slowness is something deeper.
What you're trying to solve here is known as the assignment problem : given two lists of n elements each and n×n values (the value of each pair), how to assign them so that the total "value" is maximized (or equivalently, minimized). There are several algorithms for this, such as the Hungarian algorithm ( Python implementation ), or you could solve it using more general min-cost flow algorithms, or even cast it as a linear program and use an LP solver. Most of these would have a running time of O(n 3 ).
What your algorithm above does is to try each possible way of pairing them. (The memoisation only helps to avoid recomputing answers for pairs of subsets, but you're still looking at all pairs of subsets.) This approach is at least Ω(n 2 2 2n ). For n=16, n 3 is 4096 and n 2 2 2n is 1099511627776. There are constant factors in each algorithm of course, but see the difference? :-) (The approach in the question is still better than the naive O(n!), which would be much worse.) Use one of the O(n^3) algorithms, and I predict it should run in time for up to n=10000 or so, instead of just up to n=15.
"Premature optimization is the root of all evil", as Knuth said, but so is delayed/overdue optimization: you should first carefully consider an appropriate algorithm before implementing it, not pick a bad one and then wonder what parts of it are slow. :-) Even badly implementing a good algorithm in Python would be orders of magnitude faster than fixing all the "slow?" parts of the code above (e.g., by rewriting in C).
i see two issues here:
efficiency: you're recreating the same remainingPeople sublists for each company. it would be better to create all the remainingPeople and all the remainingCompanies once and then do all the combinations.
memoization: you're using tuples instead of lists to use them as dict keys for memoization; but tuple identity is order-sensitive. IOW: (1,2) != (2,1) you better use set s and frozenset s for this: frozenset((1,2)) == frozenset((2,1))
remainingCompanies = companies[1:len(companies)]
Can be replaced with this line:
For a very slight speed increase. That's the only improvement I see.
If you want to get a copy of a tuple as a list you can do mylist = list(mytuple)
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I am trying to brute force a classical substitution cipher. The problem is that there are $26!$ possible keys. So, I'd like to do frequency analysis to try likely keys first. Then, on the first $n$ tries I will use a dictionary to see if there are actual words in the decryption. That way, I don't need to try all possible keys.
So, as suggested here , I will use chi-squared testing. I was thinking of making a matrix, best illustrated with an example. Suppose in an alphabet {A,B,C} the letter frequencies are 50%, 30% and 20% respectively, and that in a ciphertext the frequencies are 10%, 50% and 40% respectively. Then the A-B cell in the matrix is $(0.1-0.3)^2=0.04$, which is the error rate when a B in plain is encrypted as an A.
The Hungarian algorithm then gives me a frequency-analysis-wise optimal key: $A \mapsto C, B \mapsto A, C \mapsto B$. This is because the sum of the errors (0.01+0.00+0.01=0.02) is minimal. This is useful, but what I need is the $n$ best keys.
The only thing I can come up with is to run the Hungarian algorithm, and then set one of the cells in the matrix above corresponding to the key found to a high value, so that if you run the algorithm again the key you find doesn't contain the mapping. So, in the example above, you could set A-C to 1 so that when you run the Hungarian algorithm again you find a different key that doesn't contain $A\mapsto C$.
However, this isn't guaranteed to find good keys in order. What would be a better way to extend the Hungarian algorithm to find the best $n$ keys?
Epilogue : after implementing this using D.W.'s approach below , it turned out that this method doesn't perform well enough to crack small-length (at least up to 1000 letters) cipher texts, because frequency analysis alone isn't enough. Performance may be improved by taking frequent digrams or trigrams into account, but I doubt this method can be as powerful as simple hill climbing .
Here's one technique to enumerate the best $n$ assignments, for any instance of the assignment problem. I suspect my approach isn't optimal, but it does run in polynomial time: it uses $O(nm)$ invocations of the Hungarian algorithm, where $m$ denotes the number of agents in the problem instance. In your example, $m=26$, so my approach requires $O(n)$ invocations of the Hungarian algorithm.
Let $A_1,A_2,A_3,\dots$ denote the assignments, from best to worse. $A_1$ is the best assignment; $A_2$ is the next-best; and so on. Our goal want to enumerate $A_1,\dots,A_n$.
You can find $A_1$ by solving the original assignment problem, e.g., with the Hungarian algorithm.
How can we find $A_2$, the second-best assignment? The idea is to use a case analysis. Let $v_1,\dots,v_m$ denote the $m$ agents in the problem instance, and let $A(v)$ denote the task assigned to agent $v$ by assignment $A$. We'll break down the space $\mathcal{S}$ of possible candidates for $A_2$ (i.e., the space of all assignments other than $A_1$) into the disjoint union $\mathcal{S} = \mathcal{S}_1 \cup \dots \cup \mathcal{S}_m$, where $\mathcal{S}_i$ is the space of assignments that agree with $A_1$ for $v_1,\dots,v_{i-1}$ but disagree with $A_1$ on $v_i$. (In other words, we look at the first agent that receives a different assignment in $A_1$ vs $A_2$. Then there are $m$ possibilities for that agent; we let $i$ denote its index, i.e., the index of the first agent whose assignment in $A_1$ is different from its assignment in $A_2$. This breaks down the space $\mathcal{S}$ into subspaces $\mathcal{S}_1,\dots, \mathcal{S}_m$, as listed before.)
Now the approach will be to find the best assignment in each $\mathcal{S}_i$, separately.
$\mathcal{S}_1$: We find the best assignment $A$ such that $A(v_1) \ne A_1(v_1)$ using one invocation of the Hungarian algorithm, by changing the cost of the edge $(v_1,A_1(v_1))$ to $\infty$ (or some very large positive number) and then re-running the Hungarian algorithm. This finds the best assignment out of all assignments that assign $v_1$ to something different than $A_1$ did.
$\mathcal{S}_2$: We find the best assignment $A$ such that $A(v_1) = A_1(v_1)$ and $A(v_2) \ne A_1(v_2)$ using one invocation of the Hungarian algorithm: change the cost of the edge $(v_1,A_1(v_1))$ to $0$, and change the cost of the edge $(v_2,A_1(v_2))$ to $\infty$.
$\mathcal{S}_i$: Similarly, for each $i$, we can find the best assignment $A$ such that $A(v_j) = A_1(v_j)$ for all $j=1,2,\dots,i-1$ and such that $A(v_i) \ne A_1(v_i)$, using one invocation of the Hungarian algorithm.
This gives us $m$ assignments, i.e., $m$ candidates for $A_2$. By construction, each one of these assignments is different from $A_1$. Also, by construction, this covers all the space of all assignments that are different from $A_1$. Therefore, $A_2$ will be the best of these $m$ candidates, so we can just compare these $m$ candidates and call it $A_2$.
That find the second-best assignment. How can we find $A_3$, the third-best assignment? Well, the same ideas apply: we'll use a case split, but now the case-split will be a little more involved. Suppose that $v_i$ is the first agent where $A_1$ and $A_2$ disagree (i.e., $A_1$ and $A_2$ agree on $v_1,\dots,v_{i-1}$ but disagree on $v_i$, so that $A_2 \in \mathcal{S}_i$). Then we can break down the space of possibilities for $A_3$ by looking at the first agent that receives a different assignment from $A_2$, or from $A_1$.
In particular, let $\mathcal{T}$ denote the space of possible candidates for $A_3$ (i.e., the space of all assignments other than $A_1$ or $A_2$). We can partition it into the disjoint union
$$\mathcal{T} = \mathcal{S}_1 \cup \dots \cup \mathcal{S}_{i-1} \cup (\mathcal{T}_1 \cup \dots \cup \mathcal{T}_m) \cup \mathcal{S}_{i+1} \cup \dots \cup \mathcal{S}_m.$$
In other words, since $A_2 \in S_i$ and we now want to exclude $A_2$ from the space of allowable assignments, we partition $S_i$ into $S_i = \{A_2\} \cup \mathcal{T}_1 \cup \dots \cup \mathcal{T}_m$ and remove $A_2$. Here $\mathcal{T}_j$ denotes the set of assignments that agree with $A_2$ on $v_1,\dots,v_{j-1}$ but disagrees with $A_2$ on $v_j$ (and, if $j=i$, disagrees with $A_1$ on $v_j$ as well).
Now, we use the Hungarian algorithm to find the best assignment in each of $\mathcal{S}_1, \dots, \mathcal{S}_{i-1}, \mathcal{T}_1, \dots, \mathcal{T}_m, \mathcal{S}_{i+1}, \dots, \mathcal{S}_m$. This is doable using the techniques shown above, using one invocation of the Hungarian algorithm per subspace. Finally, we let $A_3$ be best of all the solutions found.
We can continue in this way, at each step identifying the next-best by decomposing the space of remaining assignments into multiple subspaces and invoking the Hungarian algorithm on each subspace. At each step, we introduce at most $m$ new subspaces, and we can reuse the previously-obtained results for the other subspaces. Therefore, on each step we make at most $m$ invocations of the Hungarian algorithm, so the total number of invocations of the Hungarian algorithm is $O(nm)$.
There's probably a better way to do it, but if you can't find any other algorithm, this is one you could use. Note that this is a general technique for problem of enumerating the $n$ best assignments to any instance of the assignment problem. It's not specific to your substitution-cipher example.
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Global constrained optimization problems are very complex for engineering applications. To solve complicated and constrained optimization problems with fast convergence and accurate computations, a new quantum artificial bee colony algorithm using Sin chaos and Cauchy factor (SCQABC) is proposed. The algorithm introduces a quantum bit to initialize the population, which is then updated by the quantum rotation gate to enhance the convergence of the artificial bee colony algorithm (ABC). Sin chaos is introduced to process the individual positions, which improves the randomness and ergodicity of initializing individuals and results in a more diverse initial population. To overcome the upper limits of visiting target individual positions, Cauchy factor is used to mutate individuals for solving falling into local optimum problems. To evaluate the performance of the SCQABC, 20 classical benchmark functions and CEC-2017 are used. The practical engineering problems are also used to verify the practicability of SCQABC algorithm. Moreover, the experimental results will be compared with other well-known and progressive algorithms. According to the results, the SCQABC improves by 64.93% compared with the ABC and also has corresponding improvement compared with other algorithms. Its successful application to the robot gripper problem highlights its effectiveness in solving constrained optimization problems.
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This work is funded by the Natural Science Foundation of Zhejiang Province (Grant No. LY22F030012), the National Natural Science Foundation of China (Grant No. 62003320) and Fundamental Research Funds for the Provincial Universities of Zhejiang (Grant No. 2021YW10).
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College of Mechanical and Electrical Engineering, China Jiliang University, Hangzhou, 310018, China
Ruizi Ma, Junbao Gui, Jun Wen & Xu Guo
School of Electrical and Information Engineering, Tianjin University, Tianjin, 300072, China
Ningbo Yaohua Electric Company, Ningbo, 315324, China
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Ruizi Ma provided the methodlogy and implemention of the research. Ruizi Ma and Junbao Gui write the paper. Jun Wen and Xu Guo edit the paper.
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Ma, R., Gui, J., Wen, J. et al. Chaos quantum bee colony algorithm for constrained complicate optimization problems and application of robot gripper. Soft Comput (2024). https://doi.org/10.1007/s00500-024-09877-8
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This paper investigates a practical batching decision problem that arises in the batch annealing operations in the cold rolling stage of steel production faced by most large iron and steel companies in the world. The problem is to select steel coils from ...
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QuickMatch: A Very Fast Algorithm for the Assignment Problem by Yusin Lee and James B. Orlin Abstract In this paper, we consider the linear assignment problem defined on a bipartite network G = ( U V, A). The problem may be described as assigning each person in a set IU to a set V of tasks so as to minimize the total cost of the assignment. ...
The assignment problem is a fundamental combinatorial optimization problem. In its most general form, the problem is as follows: ... This is currently the fastest run-time of a strongly polynomial algorithm for this problem. If all weights are integers, ...
I need this part of the program to be as fast as possible. I'm wondering if there is an optimal algorithm I should use. I have been researching and came across the Hungarian algorithm but I'm wondering if there is another option I should be considering. Here is an example of the problem: My grid has its' positions labelled, a,b,c,d ...
The algorithm maintains a matching M and compatible prices p. Pf. Follows from Lemmas 2 and 3 and initial choice of prices. ! Theorem. The algorithm returns a min cost perfect matching. Pf. Upon termination M is a perfect matching, and p are compatible Optimality follows from Observation 2. ! Theorem. The algorithm can be implemented in O(n 3 ...
We'll handle the assignment problem with the Hungarian algorithm (or Kuhn-Munkres algorithm). I'll illustrate two different implementations of this algorithm, both graph theoretic, one easy and fast to implement with O (n4) complexity, and the other one with O (n3) complexity, but harder to implement.
Hungarian algorithm steps for minimization problem. Step 1: For each row, subtract the minimum number in that row from all numbers in that row. Step 2: For each column, subtract the minimum number in that column from all numbers in that column. Step 3: Draw the minimum number of lines to cover all zeroes.
The theoretical analysis and computational testing supports the hypothesis that QuickMatch runs in linear time on randomly generated sparse assignment problems, and presents some theoretical justifications as to why the algorithm's performance is superior in practice to the usual SSP algorithm. In this paper, we consider the linear assignment problem defined on a bipartite network G = ( U V, A).
The-scaling auction algorithm [5] and the Goldberg & Kennedy algorithm [13] are algorithms that solve the assignment problem. The -scaling auction algorithm operates like a real auction, where a set of persons U, compete for a set of objects V. In this scenario, to each object is assigned a price which, in certain sense, represents
Includes bibliographical references (p. 25-27). Alfred P. Sloan School of Management, Massachusetts Institute of Technology
Time complexity : O(n^3), where n is the number of workers and jobs. This is because the algorithm implements the Hungarian algorithm, which is known to have a time complexity of O(n^3). Space complexity : O(n^2), where n is the number of workers and jobs.This is because the algorithm uses a 2D cost matrix of size n x n to store the costs of assigning each worker to a job, and additional ...
From this, we could solve it as a transportation problem or as a linear program. However, we can also take advantage of the form of the problem and put together an algorithm that takes advantage of it- this is the Hungarian Algorithm. The Hungarian Algorithm The Hungarian Algorithm is an algorithm designed to solve the assignment problem. We ...
Mex implementation of Bertsekas' auction algorithm [1] for a very fast solution of the linear assignment problem. The implementation is optimised for sparse matrices where an element A (i,j) = 0 indicates that the pair (i,j) is not possible as assignment. Solving a sparse problem of size 950,000 by 950,000 with around 40,000,000 non-zero ...
It solves all LP problems and focus in development is to be fast on average on all LPs and also to be fast-ish in the pathological cases. When using the Hungarian method, you do not build a model, you just pass the cost matrix to a tailored algorithm. You will then use an algorithm developed for that specific problem to solve it.
It is worth noting, however, that the fastest known algorithms for solving high-multiplicity "flow-based" assignment problems run in Ω(mn) worst- case time, so our new results now provide a significant algorithmic incentive to model assignment problems as stable allocation problems rather than flow problems.
(The rectangular linear assignment problem, as defined here). I know this can be done by duplicating the ... Is my problem in fact $\Theta(m^3)$? I.e., is the method of duplicating workers and using Kuhn-Munkres (as fast as) the fastest algorithm for solving the rectangular linear assignment problem (RLAP)?. I want to know because I have a ...
October 2023. Arizona State University/SCAI Report. ignment Problem and Extensions ybyDimitri Bertsekas zAbstractWe consider the classical linear assignment problem, and we introduc. new auction algorithms for its optimal and suboptimal solution. The algorithms are founded on duality theory, and are related to ideas of competitive bidding by ...
This is a Python implementation of an algorithm for approximately solving quadratic assignment problems described in. Joshua T. Vogelstein and John M. Conroy and Vince Lyzinski and Louis J. Podrazik and Steven G. Kratzer and Eric T. Harley and Donniell E. Fishkind and R. Jacob Vogelstein and Carey E. Priebe (2012) Fast Approximate Quadratic Programming for Large (Brain) Graph Matching.
There are a few papers which have fast algorithms for weighted bipartite graphs. A recent paper Ramshaw and Tarjan, 2012 "On Minimum-Cost Assignments in Unbalanced Bipartite Graphs" presents an algorithm called FlowAssign and Refine that solves for the min-cost, unbalanced, bipartite assignment problem and uses weight scaling to solve the perfect and imperfect assignment problems, but not ...
2. I want to solve job assignment problem using Hungarian algorithm of Kuhn and Munkres in case when matrix is not square. Namely we have more jobs than workers. In this case adding additional row is recommended to make matrix square. For example in the following link. And here task IV is assumed to be done.
This paper describes a new algorithm called QuickMiatch for solving the assignment problem. QuickMatch is based on the successive shortest path (SSP) algorithm for the assignment problem, which in ...
I need this part of the program to be as fast as possible. I'm wondering if there is an optimal algorithm I should use. In my research I have come across the Hungarian algorithm, but I'm wondering if there is another option I should be considering. Here is an example of the problem: My grid has its' positions labelled, a,b,c,d ...
What you're trying to solve here is known as the assignment problem: given two lists of n elements each and n×n values (the value of each pair), how to assign them so that the total "value" is maximized (or equivalently, minimized). There are several algorithms for this, such as the Hungarian algorithm ( Python implementation ), or you could ...
S1: We find the best assignment A such that A(v1) ≠ A1(v1) using one invocation of the Hungarian algorithm, by changing the cost of the edge (v1,A1(v1)) to ∞ (or some very large positive number) and then re-running the Hungarian algorithm. This finds the best assignment out of all assignments that assign v1 to something different than A1 did.
Multi-Objective Assignment Problems in Time-Critical Se˛ings: An Application in Air Tra˙ic Flow Management ... Amrit Pratap, and T. Meyarivan. 2000. A Fast Elitist Non-dominated Sorting Genetic Algorithm for Multi-objective Optimiza-tion: NSGA-II. In Parallel Problem Solving from Nature PPSN VI, Marc Schoenauer, ... algorithms for the bi ...
Global constrained optimization problems are very complex for engineering applications. To solve complicated and constrained optimization problems with fast convergence and accurate computations, a new quantum artificial bee colony algorithm using Sin chaos and Cauchy factor (SCQABC) is proposed. The algorithm introduces a quantum bit to initialize the population, which is then updated by the ...
First, a mixed integer linear programming model is proposed. Further, a Greedy heuristic algorithm and two metaheuristics are developed to solve large-sized instances of the problem. Metaheuristics include a Greedy Randomized Adaptive Search Procedure (GRASP) and a hybrid algorithm that combines Ant Colony System with the GRASP (ACS-GRASP).